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protein sequence comparison software

ClustalW2 is a general purpose DNA or protein multiple sequence alignment p...

📦 .zip⚖️ 114.8 MB📅 09 Oct 2025

ClustalW2 is a general purpose DNA or protein multiple sequence alignment program for three or more sequences. For the alignment of two sequences please.

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SIM (References) is a program which finds a user-defined number of best non...

📦 .zip⚖️ 42.3 MB📅 30 May 2026

SIM (References) is a program which finds a user-defined number of best non-intersecting alignments between two protein sequences or within a sequence.

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SIB resources external logo External resources - (No support from the ExPAS...

📦 .zip⚖️ 52.7 MB📅 14 Apr 2026

SIB resources external logo External resources - (No support from the ExPASy Team). Tools. Alignment tools • Four tools for multiple alignments • [more].

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BLASTP programs search protein subjects using a protein query. more Reset p...

📦 .zip⚖️ 55.9 MB📅 21 Feb 2026

BLASTP programs search protein subjects using a protein query. more Reset page Bookmark. Enter Query Sequence. Enter accession number(s), gi(s).

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This list of sequence alignment software is a compilation of software tools...

📦 .zip⚖️ 49.6 MB📅 30 Oct 2025

This list of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence alignment. See structural alignment software for structural alignment of proteins.‎Database search only · ‎Pairwise alignment · ‎Multiple sequence · ‎Motif finding.

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GeneWise (EMBL-EBI) - compares a protein sequence to a genomic DNA sequence...

📦 .zip⚖️ 87.4 MB📅 01 Jan 2026

GeneWise (EMBL-EBI) - compares a protein sequence to a genomic DNA sequence Clustal Omega - is a new multiple sequence alignment program that uses.

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DNASTAR's sequence alignment software for DNA, RNA, and protein sequen...

📦 .zip⚖️ 72.5 MB📅 23 Oct 2025

DNASTAR's sequence alignment software for DNA, RNA, and protein sequences offers several different methods pairwise and multiple alignment methods.

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Enter your sequences (with labels) below (copy & paste): PROTEIN DNA. S...

📦 .zip⚖️ 111.3 MB📅 11 Apr 2026

Enter your sequences (with labels) below (copy & paste): PROTEIN DNA. Support Formats: FASTA (Pearson), NBRF/PIR, EMBL/Swiss Prot, GDE, CLUSTAL.

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Find and compare the best bioinformatics software for aligning pairwise pro...

📦 .zip⚖️ 90.4 MB📅 03 Oct 2025

Find and compare the best bioinformatics software for aligning pairwise protein sequences. Tools are ranked by the biomedical research community.

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T-Coffee is a multiple sequence alignment server. It can align Protein, DNA...

📦 .zip⚖️ 71.1 MB📅 14 Jan 2026

T-Coffee is a multiple sequence alignment server. It can align Protein, DNA and RNA sequences. You can use T-Coffee to align sequences or to combine the.

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Interactive JavaScript and HTML5 based multiple sequence alignment for web ...

📦 .zip⚖️ 49.7 MB📅 20 Jan 2026

Interactive JavaScript and HTML5 based multiple sequence alignment for web sites At the top of the Strap Program you find a button to install Cygwin. Compare proteins by sequence and 3D-similarity; Search protein databases; Underline.

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Multiple sequence alignment software. Fasta format. example1 (LSU rRNA), ex...

📦 .zip⚖️ 113.6 MB📅 08 Nov 2025

Multiple sequence alignment software. Fasta format. example1 (LSU rRNA), example2 (protein) A fast option (FFT-NS-2) for a larger sequence alignment.

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MUSCLE is one of the best-performing multiple alignment programs according ...

📦 .zip⚖️ 48.7 MB📅 19 Jan 2026

MUSCLE is one of the best-performing multiple alignment programs according to published MUSCLE can align hundreds of sequences in seconds.

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This means that the user can specify arbitrary sequence positions and force...

📦 .zip⚖️ 97.5 MB📅 20 Apr 2026

This means that the user can specify arbitrary sequence positions and force the program to align these positions to.

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PRALINE is a multiple sequence alignment program with many options to optim...

📦 .zip⚖️ 61.6 MB📅 07 Feb 2026

PRALINE is a multiple sequence alignment program with many options to optimise Paste in your PROTEIN sequences in FASTA format (MAX sequences.

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